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Tuesday, November 03, 2009

A Genetically Engineered Rainbow of Bacteria

Students showcase a new wave of biological machines.
Students from Cambridge University, in England, engineered bacteria to produce pigments in all colors of the rainbow (shown above) as part of the International Genetically Engineered Machines Competition at MIT. Credit: Mike Davies

Bioengineering students from around the world converged on MIT this weekend in what has become an annual ritual in synthetic biology--iGEM, the international genetically engineered machines competition. Among the finalists this year were "GluColi", a new generation of glue made by bacteria, a biological version of an LCD screen made of yeast, and a multicolored menagerie of bacteria that might ultimately become part of a biological system designed to change color in response to toxins or other target compounds, providing an easy-to-read warning system.

By combining snippets of DNA, dubbed biological "parts", students build microbes designed to perform useful functions, such as producing medicines or detecting toxins. Each year "parts" built for the competition are entered into a biological library, so that next year's teams can use them to build even more sophisticated machines. As iGEM co-founder and MIT bioengineer Tom Knight explained in a previous piece, "The key idea here is to develop a library of composable parts which we think of in the same way as Lego blocks. These parts can be assembled into more-complex pieces, which in many cases are functional when inserted into living cells."

Entries into previous years have included yeast designed to produce beer with the health benefits of red wine, sweet-smelling E. coli, a commonly used research bacterium with a vile odor, and probiotic bacteria, like that found in yogurt, designed to fight cavities, produce vitamins, and treat lactose intolerance.

To make multicolored microbes, students from Cambridge University, in England, mined bacterial genomes for pigment-producing genes. They then engineered those genes into the harmless strain of E. coli used in genetic research. Carotinoid enzymes co-opted from Pantoea ananatis, a bacterium that can rot onions, generated red and orange pigments. A gene for melanin, an enzyme from the soil bacterium Rhizobium etli, produces brown. Chromobacterium violacein, a soil and water dwelling microbe offered genes capable of producing shades of violet, green and blue.

Comments

  • doesn't it bother anyone
    doesn't it bother anyone that bacteria can be treated like legos? what if these get loose? how stable are the genetic modifications? there seems to be a casualness of playing around with this stuff that scares me. someday someone will say "oops!", then what?
    Rate this comment: 12345

    mland
    11/04/2009
    Posts:1
    Avg Rating:
    2/5
    • Re: doesn't it bother anyone
      /facepalm
      Rate this comment: 12345

      BigD
      11/05/2009
      Posts:1
      Avg Rating:
      3/5
    • Re: doesn't it bother anyone
      The E.coli strain used in our research is non-pathogenic and of Biosafety Level 1 ("work involving well-characterized agents not known to consistently cause disease in healthy adult humans, and of minimal potential hazard to laboratory personnel and the environment"). The red and orange pigments are in fact the exact same substances you find in tomatoes and carrots. Strict laboratory procedures were followed in the course of research. Further Bio-containment measures can be taken to ensure that the E.coli strains cannot survive outside laboratory environment (e.g. to create nutrient-deficient strains which can only survive if they are grown with specific media in the lab). Please refer to our webpage on safety for further information (http://2009.igem.org/Team:Cambridge/Safety).
      Rate this comment: 12345

      msmsimon
      11/05/2009
      Posts:1
      Avg Rating:
      5/5
    • Re: doesn't it bother anyone
      The analogy I like to use is the fear that a pack of Pomeranians dropped into the woods will out-compete the wolves. They won't. Though they might provide them a snack.
      Rate this comment: 12345

      Monsterboy
      11/10/2009
      Posts:89
      Avg Rating:
      4/5
  • [no subject]
    I had no idea e coli was harmless!  You mean those cleaning product ads have been lying to me all this time?  And now it even smells good...
    Rate this comment: 12345

    fingersandto...
    11/05/2009
    Posts:1
  • [no subject]
    Students showcase a new wave of biological machines.

    Rate this comment: 12345

    SamantaDrue
    11/23/2009
    Posts:3
    Avg Rating:
    5/5
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