TR Editors' blog
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Friday, November 06, 2009
Computer-Predicted Catalysis
Two computer programs accurately predict how molecules interact with metals
By Katherine Bourzac
The
basic theory of how chemical reactions happen--molecules approach each other,
overcome potential energy, and then form new reactants--has held up in experiments
almost every time. But the theory doesn't fully explain what happens when a
molecule approaches a metal surface, such as the surface of an industrial
catalyst. This is important because metal catalysts are widely used in
catalytic converters, fuel cells, and even to make margarine.
What
makes metals tricky is that they don't have discrete energy states like
molecules--rather than jumping from one specific energy level to another,
electrons move between energy states in a metal in a more continuous way.
Two
papers published in the journal Science this week use new algorithms to better
describe what happens at the surface of metals including catalysts.
One
describes the interactions between a gold surface and nitric oxide molecules
excited using a laser. Older models predict that when the gas hits the gold
surface it will still be vibrating. The new model predicts what actually
happens: the molecule electronically couples to the gold.
The
second paper looks at the interaction that cause hydrogen atoms on a copper
surface to bond with one another and form hydrogen gas. It remains to be seen
whether these results can be generalized, but if they can it could lead to a
better understanding of the metal catalysts widely used in industrial
chemistry.
Friday, November 06, 2009
Absent-minded Robots Remember What Matters
Robots could mimic human forgetfulness to filter out less useful information.
By Kristina Grifantini
We are constantly inundated with
new information, and to manage it effectively it's sometimes necessary to forget old, irrelevant memories.
Researchers at Vanderbilt
University have now developed an algorithm that mimics this kind of forgetfulness
in robots, as a way to filter out less useful information.
"Forgetting is a critical
capability when operating in dynamic environments," says PhD student Sanford
Freedman, who presented
the group's data filtering-software, called ActSimple, in a paper published at
the IASTED Robotics and Applications conference held
this week in Cambridge,
MA.
ActSimple draws on two facets of human
memory: time-based decay, or the way that memories disappear over time,
and interference, which is the failure to recall information due to other memories competing
for attention. ActSimple assigns different pieces of data values
depending on how often they are used, and how similar it is to other pieces
of information.
To test the software, the
researchers used it to control a simulated robot that measured the strength of
WiFi signals in a virtual environment. The robot recorded WiFi readings on a scale
of 1-100, as it moved through the virtual setting and these WiFi readings also had different levels of noise (errors) associated with them. At intervals, the robot relied on its memory to create an estimated WiFi signal map by
recalling signal strength information it had gathered and stored. The
researchers tested ActSimple against four other algorithms,
including one that strictly disregarded the oldest information, and another
that out filtered random information.
The Team found that on average,
ActSimple created the most reliable estimated WiFi map. Interestingly, when the robot "remembered"
everything--that is, used all of its gathered information (errors and all)--it generated
the least accurate map overall.
Thursday, November 05, 2009
A Map of Human-Dwelling Microbes
New research reveals more than you ever wanted to know about the bacteria inhabiting your body.
By Emily Singer
The back of your knee probably has more microbes than your
mouth or your gut--that's just one of the somewhat disturbing revelations from a
study published today online in Science.
Researchers from the University of Colorado, Boulder have developed the most
complete map yet of the microbes that dwell on and in us. "The highest
diversity skin sites were the forearms, palm, index finger, back of the knee
and sole of the foot. The armpits and soles of the feet showed some
similarities, perhaps because they are from dark and moist environments," said Noah
Fierer, one of the study's authors, in a statement.
Scientists are mapping our microbial
inhabitants in order to better understand their role in human health and disease. As I noted
in a previous feature:
Each of us contains roughly 10 times as many microbial cells
as human ones. And while some microbes make us sick, many play vital roles in
our physiology. They give us the ability to digest foods whose nutrients would
otherwise be lost to us, and they make essential vitamins and amino acids our
bodies can't. And yet, because the vast majority of these microbes die when
extracted from their native habitat, they have been impossible to study and
have remained a mystery... New ultrafast DNA-sequencing technologies allow scientists
to study the genetic makeup of entire microbial communities, each of which may
contain hundreds or thousands of different species. For the first time,
microbiologists can compare genetic snapshots of all the microbes inhabiting
people who differ by age, origin, and health status. By analyzing the functions
of those microbes' genes, they can figure out the main roles the organisms play
in our bodies.
The new study, which analyzed 27 sites on the body of nine different volunteers, found that microbial diversity varies highly, both between individuals and from place to place in the same person. According to a release
from the University of Colorado, Boulder:
The study showed humans carry "personalized"
communities of bacteria around that vary widely from our foreheads and feet to
our noses and navels, said CU-Boulder's Rob Knight, senior author on the paper.
"This is the most complete view we have yet of the microbial side of
ourselves, one that our group and others will be adding to over the coming
years," said Knight, an assistant professor in CU-Boulder's chemistry and
biochemistry department. "The goal is to find out what is normal for a
healthy person, which will provide a baseline for further studies to look at
people with diseased states. One of the biggest surprises was how much
variation there was from person to person in a healthy group of subjects." "We have an immense number of questions to answer," said Fierer,
an assistant professor in CU-Boulder's ecology and evolutionary biology
department who was a co-author on the study. "Why do healthy people have
such different microbial communities? Do we each have distinct microbial
signatures at birth, or do they evolve as we age? And how much do they matter?
We just don't know yet."
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