DNA assembly line: An atomic force microscope image shows gold nanoparticles on a DNA track.
Courtesy of Ned Seeman

Biomedicine

DNA Robots on the Move

Machines made of DNA could one day assemble complex--and tiny--electrical and mechanical devices.

  • Wednesday, May 12, 2010
  • By Prachi Patel

Its precise structure and ability to bind with other molecules makes DNA an attractive scaffolding material for nanotech researchers. Scientists have already used DNA to construct two-dimensional patterns, three-dimensional objects, and simple shape-changing devices. Now two teams of researchers have separately made complex programmable machines using DNA molecules.

Researchers from Columbia University, Arizona State University, and Caltech have made a device that follows a programmable path on a surface patterned with DNA. Meanwhile, researchers from New York University, led by DNA nanoarchitecture pioneer Ned Seeman, have combined multiple DNA devices to make an assembly line. The nano contraption picks up gold nanoparticles as it tumbles along a DNA-patterned surface.

The two machines, described in today's Nature journal, are a possible step forward in making DNA nanobots that could assemble tiny electrical and mechanical devices. DNA robots could also put together molecules in new ways to make new materials, says Lloyd Smith, a chemistry professor at the University of Wisconsin-Madison. "Robots might have the ability to position one molecule in a particular way so that a reaction happens with another molecule which might not happen if they randomly collide in solution," he says.

In the past, researchers have made simple machines such as tweezers and walkers that have also been fashioned from DNA. Tweezers open and close by adding specific DNA strands to the solution. Walkers are molecules with dangling strands, or legs, that bind and detach from other DNA strands patterned on a surface, in effect moving along the surface.

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The nano walker made at Columbia University is a protein molecule decorated with three legs--single-stranded DNAzymes, synthetic DNA molecules that act as enzymes and catalyze a reaction. The legs bind to complementary DNA strands on a surface. Then they catalyze a reaction that shortens one of the surface strands, so that its attachment to the leg becomes weaker. That leg lets go and moves on to the next surface strand.

The walker follows a track of strands that the researchers pattern on the surface. It can take up to 50 steps--compared to the two or three steps taken by previous walkers. It stops when it encounters a sequence that cannot be shortened. "We show how to program [the walker's] behavior by programming the landscape," says Milan Stojanovic, a biomedical engineer at Columbia University who developed the walker. "It enables us to think about adding further complexity: more than one molecule interacting and more complicated commands on the surface. What we hope to do eventually is to be able to [use nanobots to] repair tissues."

Seeman and his colleagues at New York University combine three different DNA components to make an assembly line. They have DNA path, a walker, and a machine that can deliver or hold back a cargo of a molecule of gold. The machine is a DNA structure that can be set up to either put a gold nanoparticle-laden strand in the path of the walker or away from it. The walker has four legs and three single-stranded DNA hands that can bind to the gold.

The researchers demonstrated a system in which the walker passes three machines, each carrying a different type of gold particle. Each machine can be set up to either deliver its cargo or keep it, giving a total of eight different ways in which the walker can be loaded, leading to eight different products.

The advances represent continuing success in creating nano devices with increasingly complex functions. "[We're] moving from individual entities that do something interesting to systems of entities working on something with a more complex behavior and function," Smith says.

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MATR

90 Comments

  • 636 Days Ago
  • 05/12/2010

Fascinating...

Just curious... a risk assessment document will be forthcoming soon?  On the assumption, though, that there is little risk involved to this kind of technology - it sounds absolutely fascinating.  It is an amazing capability.  That said... I'm worried about the potential for unintended consequences and/or malicious use.

Reply

StupidPeasant

98 Comments

  • 636 Days Ago
  • 05/12/2010

singularity is near

I can't hardly believe this stuff. It is so fantastic it freaks me out.

Reply

rsanchez1

213 Comments

  • 635 Days Ago
  • 05/13/2010

Is it unbelievable?

Is it truly unbelievable? DNA is already the most widespread nanoscale construction device on Earth. It's what creates all life as we know it. When you take that into consideration, this is very basic stuff they are doing (or planning to do) with DNA.

Reply

Netizen

131 Comments

  • 634 Days Ago
  • 05/14/2010

Shapeshifting Humans?

Imagine if this technology could one day alter a human's DNA, allowing them to "shapeshift"?

Terminator: Judgment Day showcased a robot that could alter its shape and appearance. I had no idea our own DNA possessed such remarkable capabilities.

Reply

mattgroom

286 Comments

  • 628 Days Ago
  • 05/20/2010

Walker

The concept is intriguing.

Does the leg move around until it finds the next attachment?

The principles seem quite simple as mentioned previously though. The researchers are using the dna strands to do the work, they arent using the information in the dna strands to do the work.

Quite curious that they are using DNA at all really, just shows you the amount of engenuity humans have and these people have it in spades.

Reply

maxcypher

4 Comments

  • 628 Days Ago
  • 05/20/2010

Time frame

Do these synthetic processes proceed as quickly as cellular processing?

Reply

timothyc

1 Comment

  • 553 Days Ago
  • 08/03/2010

repairing tissue

As a sci-fi fan, I'm trying to find all I can on DNA robots for a novel I'm working on. One of the first potential uses I thought of was using these nanobots to take out faulty DNA enzymes and insert advantageous ones, like FMR-1 gene, which some think is a protein involved in mental development.

So if I programmed DNA robots to remove improperly mutated FMR-1 genes (cause of Fragile X Syndrome which leads to mental retardation) and replace them with "healthy" FMR-1 genes, I could cure this syndrome and maybe even create genius babies if they were given a large amount of FMR-1 without the expanded number of CGG repeating codon which produces FXS.

Just one of many thoughts on this topic. I'm going to start a series of blog posts on my site  regarding potential uses of nanomedicine and how nanotechnology could shape our future if anyone wants to check it out and comment there: http://timothycward.com.

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