Technology Review

Biomedicine

Fingertip Bacteria: A Promising Forensic Tool

The genetic makeup of microbes on a person's skin could provide crime scene evidence.

  • Tuesday, March 16, 2010
  • By Alla Katsnelson

It's not just our genomes that make us unique. The genomic profile of bacteria that rub off our fingertips and onto objects we touch--a computer keyboard, for instance--also provides a "fingerprint" that could be used for forensic purposes, according to researchers at the University of Colorado at Boulder.

Noah Fierer, Rob Knight, and colleagues recovered bacteria from keyboards of three individuals and sequenced large numbers of bacterial genomes at once.

The researchers extracted bacterial DNA from numerous samples taken from the three keyboards and sequenced more than 1,400 copies of bacterial ribosomal gene from each sample to identify the individual species of bacteria each sample contained, finding they could match the three individuals with the keyboards they used. They then took swabs from computer mouses of nine different people. When they compared the bacteria found in the samples to a database of microbial communities found on 270 hands of people who had never touched any of the computer mouses, the researchers found that the bacteria on each person's mouse was more similar to that on their hand than to samples in the database. So far, Fierer notes, the technique is extremely preliminary, but it could one day be as accurate as techniques like DNA or fingerprint analysis, he says.

The idea of using a microbial "signature" to identify individuals is not new, says David Relman, a professor of medicine, and of microbiology and immunology at Stanford University. For decades, researchers have wondered whether it may be possible to identify individuals based on, say, the unique strains of Escherichia coli harbored in their gut. Until recently, though, "all the ideas that were floating around couldn't really be explored in a really detailed and methodical way," Relman says.

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In the past few years, faster and cheaper sequencing technology has paved the way for extensive studies of the various microbial communities harbored in the human body, and researchers have devised DNA "bar codes"--short strands of characteristic DNA--that allow them to easily identify species of bacteria.

"You could not do this literally three years ago," says Lance Price, director of the Center for Metagenomics and Human Health at the Translational Genomics Research Institute in Arizona.

A handful of recent studies within the Human Microbiome Project, including one from the same researchers, have shown that the makeup of microbes in the skin of different individuals, and even those found on different parts of the same person's body, varies consistently. The current study shows that "even the residue of microbiota that are left behind retains the features of individuality," says Relman. As a forensics technique, he notes, "this is way too early for application, but one day this could become robust."

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jjaenisch

10 Comments

  • 696 Days Ago
  • 03/16/2010

Too much variability?

I can't quite understand how this would be useful for a crime, considering that by just changing your diet, your body will have dramatically different conditions that would support variable microbial communities. Just before a crime, drink only a gallon of water for the 36 hours prior to your act and have a strict diet of only preserved foods (e.g. coming from cans), and then after the crime drink at least a liter ever two hours and eat fresh produce. Easy way to change your microbial profile. Or even, just lick your hands before you touch anything... You'll have your mouth's profile and not the usual finger one...
Seems like a method of identifying a person within a certain time frame, but never being able to connect it to an individual that has had the ability to change conditions on their body. Pretty useless for crime then...

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RD

211 Comments

  • 696 Days Ago
  • 03/16/2010

Re: Too much variability?

The crimes of passion don't usually have as much foresight.  Consider this technology can be used to rule out suspects.

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gabrielg01

450 Comments

  • 696 Days Ago
  • 03/16/2010

Re: Too much variability?

Yes, this type of evidence is very easy to manipulate.

Eat some yogurt, some pickled food, or pop some pills of antibiotics and the profile of your bacterial population could be changed in minutes or hours.

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RD

211 Comments

  • 696 Days Ago
  • 03/16/2010

Preserve Evidence

With this potential forensic technology, its even more critical to preserve evidence from deterioration due to atmospheric corrosive gases, UV, and static electricity.  One of the Intercept Technology Group companies, Xtend Packaging, recently unveiled a line of Intercept Technology packaging products that protects evidence from deterioration while in the evidence storage locker.  Perhaps protecting the microbes on evidence over the long-term is another use.

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